For the record: to exclude compileJava
task from rootProject I use the -x :compileJava
Example:
./gradlew compileJava -x :compileJava
> Task :sampleA:compileJava UP-TO-DATE
> Task :sampleA:classes
> Task :sampleB:compileJava UP-TO-DATE
> Task :sampleB:classes
If you find a better way of doing this, please let me know.